Class: CasePhenotypeMatrixResponse

Complete case-phenotype matrix for a disease

URI: https://w3id.org/monarch/monarch-py/CasePhenotypeMatrixResponse

 classDiagram
    class CasePhenotypeMatrixResponse
    click CasePhenotypeMatrixResponse href "../CasePhenotypeMatrixResponse/"
      CasePhenotypeMatrixResponse : bins





        CasePhenotypeMatrixResponse --> "*" HistoPhenoBin : bins
        click HistoPhenoBin href "../HistoPhenoBin/"



      CasePhenotypeMatrixResponse : cases





        CasePhenotypeMatrixResponse --> "*" CaseEntity : cases
        click CaseEntity href "../CaseEntity/"



      CasePhenotypeMatrixResponse : cells





        CasePhenotypeMatrixResponse --> "*" CasePhenotypeCellData : cells
        click CasePhenotypeCellData href "../CasePhenotypeCellData/"



      CasePhenotypeMatrixResponse : disease_id

      CasePhenotypeMatrixResponse : disease_name

      CasePhenotypeMatrixResponse : phenotypes





        CasePhenotypeMatrixResponse --> "*" CasePhenotype : phenotypes
        click CasePhenotype href "../CasePhenotype/"



      CasePhenotypeMatrixResponse : total_cases

      CasePhenotypeMatrixResponse : total_phenotypes

Slots

Name	Cardinality and Range	Description	Inheritance
disease_id	1 String	The identifier for a disease entity	direct
disease_name	0..1 String	The name of a disease entity	direct
total_cases	1 Integer	Total number of cases in the matrix	direct
total_phenotypes	1 Integer	Total number of phenotypes in the matrix	direct
cases	* CaseEntity	List of case entities in the matrix	direct
phenotypes	* CasePhenotype	List of phenotype entities in the matrix	direct
bins	* HistoPhenoBin	List of histopheno bins for grouping phenotypes	direct
cells	* CasePhenotypeCellData	Map of case-phenotype cell data keyed by case_id:phenotype_id	direct

Identifier and Mapping Information

Schema Source

• from schema: https://w3id.org/monarch/monarch-py

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/monarch/monarch-py/CasePhenotypeMatrixResponse
native	https://w3id.org/monarch/monarch-py/CasePhenotypeMatrixResponse

LinkML Source

Direct

name: CasePhenotypeMatrixResponse
description: Complete case-phenotype matrix for a disease
from_schema: https://w3id.org/monarch/monarch-py
slots:
- disease_id
- disease_name
- total_cases
- total_phenotypes
- cases
- phenotypes
- bins
- cells
slot_usage:
  disease_id:
    name: disease_id
    required: true
  total_cases:
    name: total_cases
    required: true
  total_phenotypes:
    name: total_phenotypes
    required: true
  cases:
    name: cases
    range: CaseEntity
    multivalued: true
    inlined_as_list: true
  phenotypes:
    name: phenotypes
    range: CasePhenotype
    multivalued: true
    inlined_as_list: true
  bins:
    name: bins
    range: HistoPhenoBin
    multivalued: true
    inlined_as_list: true
  cells:
    name: cells
    range: CasePhenotypeCellData
    multivalued: true
    inlined: true
    inlined_as_list: false

Induced

name: CasePhenotypeMatrixResponse
description: Complete case-phenotype matrix for a disease
from_schema: https://w3id.org/monarch/monarch-py
slot_usage:
  disease_id:
    name: disease_id
    required: true
  total_cases:
    name: total_cases
    required: true
  total_phenotypes:
    name: total_phenotypes
    required: true
  cases:
    name: cases
    range: CaseEntity
    multivalued: true
    inlined_as_list: true
  phenotypes:
    name: phenotypes
    range: CasePhenotype
    multivalued: true
    inlined_as_list: true
  bins:
    name: bins
    range: HistoPhenoBin
    multivalued: true
    inlined_as_list: true
  cells:
    name: cells
    range: CasePhenotypeCellData
    multivalued: true
    inlined: true
    inlined_as_list: false
attributes:
  disease_id:
    name: disease_id
    description: The identifier for a disease entity
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: disease_id
    owner: CasePhenotypeMatrixResponse
    domain_of:
    - CasePhenotypeMatrixResponse
    range: string
    required: true
  disease_name:
    name: disease_name
    description: The name of a disease entity
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: disease_name
    owner: CasePhenotypeMatrixResponse
    domain_of:
    - CasePhenotypeMatrixResponse
    range: string
  total_cases:
    name: total_cases
    description: Total number of cases in the matrix
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: total_cases
    owner: CasePhenotypeMatrixResponse
    domain_of:
    - CasePhenotypeMatrixResponse
    range: integer
    required: true
  total_phenotypes:
    name: total_phenotypes
    description: Total number of phenotypes in the matrix
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: total_phenotypes
    owner: CasePhenotypeMatrixResponse
    domain_of:
    - CasePhenotypeMatrixResponse
    range: integer
    required: true
  cases:
    name: cases
    description: List of case entities in the matrix
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: cases
    owner: CasePhenotypeMatrixResponse
    domain_of:
    - CasePhenotypeMatrixResponse
    range: CaseEntity
    multivalued: true
    inlined: true
    inlined_as_list: true
  phenotypes:
    name: phenotypes
    description: List of phenotype entities in the matrix
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: phenotypes
    owner: CasePhenotypeMatrixResponse
    domain_of:
    - CasePhenotypeMatrixResponse
    range: CasePhenotype
    multivalued: true
    inlined: true
    inlined_as_list: true
  bins:
    name: bins
    description: List of histopheno bins for grouping phenotypes
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: bins
    owner: CasePhenotypeMatrixResponse
    domain_of:
    - CasePhenotypeMatrixResponse
    - EntityGridResponse
    range: HistoPhenoBin
    multivalued: true
    inlined: true
    inlined_as_list: true
  cells:
    name: cells
    description: Map of case-phenotype cell data keyed by case_id:phenotype_id
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: cells
    owner: CasePhenotypeMatrixResponse
    domain_of:
    - CasePhenotypeMatrixResponse
    - EntityGridResponse
    range: CasePhenotypeCellData
    multivalued: true
    inlined: true
    inlined_as_list: false