agent_type |
Describes the high-level category of agent who originally generated a statem... |
aggregator_knowledge_source |
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ancestor_id |
the most recent common ancestor of the two compared entities |
ancestor_information_content |
The IC of the object |
ancestor_label |
the name or label of the ancestor concept |
ancestor_source |
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associated_categories |
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association_counts |
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average_score |
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best_score |
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category |
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causal_gene |
A list of genes that are known to be causally associated with a disease |
causes_disease |
A list of diseases that are known to be causally associated with a gene |
cosine_similarity |
the dot product of two node embeddings divided by the product of their length... |
count |
count of documents |
counterpart_category |
The category of the counterpart entity in a given association, eg |
deprecated |
A boolean flag indicating that an entity is no longer considered current or v... |
description |
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dice_similarity |
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direction |
The directionality of the association relative to a given entity for an assoc... |
disease_context_qualifier |
A context qualifier representing a disease or condition in which a relationsh... |
disease_context_qualifier_category |
The category of the disease_context_qualifier entity |
disease_context_qualifier_closure |
Field containing disease_context_qualifier id and the ids of all of it's ance... |
disease_context_qualifier_closure_label |
Field containing disease_context_qualifier name and the names of all of it's ... |
disease_context_qualifier_label |
The name of the disease_context_qualifier entity |
disease_context_qualifier_namespace |
The namespace/prefix of the disease_context_qualifier entity |
end |
end position of the annotation |
evidence_count |
count of supporting documents, evidence codes, and sources supplying evidence |
external_links |
ExpandedCurie with id and url for xrefs |
facet_fields |
Collection of facet field responses with the field values and counts |
facet_queries |
Collection of facet query responses with the query string values and counts |
facet_values |
Collection of FacetValue label/value instances belonging to a FacetField |
frequency_qualifier |
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frequency_qualifier_category |
The category of the frequency_qualifier entity |
frequency_qualifier_closure |
Field containing frequency_qualifier id and the ids of all of it's ancestors |
frequency_qualifier_closure_label |
Field containing frequency_qualifier name and the names of all of it's ancest... |
frequency_qualifier_label |
The name of the frequency_qualifier entity |
frequency_qualifier_namespace |
The namespace/prefix of the frequency_qualifier entity |
full_name |
The long form name of an entity |
graph_stats |
|
grouping_key |
A concatenation of fields used to group associations with the same essential/... |
has_count |
count of out of has_total representing a frequency |
has_evidence |
|
has_evidence_links |
List of ExpandedCuries with id and url for evidence |
has_percentage |
percentage, which may be calculated from has_count and has_total, as 100 * qu... |
has_phenotype |
A list of phenotype identifiers that are known to be associated with this ent... |
has_phenotype_closure |
A list of phenotype identifiers that are known to be associated with this ent... |
has_phenotype_closure_label |
A list of phenotype labels that are known to be associated with this entity e... |
has_phenotype_count |
A count of the number of phenotypes that are known to be associated with this... |
has_phenotype_label |
A list of phenotype labels that are known to be associated with this entity |
has_quotient |
quotient, which should be 1/100 of has_percentage |
has_total |
total, devided by has_count, representing a frequency |
highlight |
matching text snippet containing html tags |
id |
|
in_taxon |
The biolink taxon that the entity is in the closure of |
in_taxon_label |
The label of the biolink taxon that the entity is in the closure of |
information_content |
The IC is the negative log of the probability of the concept |
inheritance |
|
intersection_count |
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iri |
|
items |
A collection of items, with the type to be overriden by slot_usage |
jaccard_similarity |
The number of concepts in the intersection divided by the number in the union |
kg |
|
knowledge_level |
Describes the level of knowledge expressed in a statement, based on the reaso... |
knowledge_source |
|
label |
|
limit |
number of items to return in a response |
mapping_justification |
|
mappings |
List of ExpandedCuries with id and url for mapped entities |
match_source |
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match_source_label |
|
match_subsumer |
|
match_subsumer_label |
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match_target |
the entity matches |
match_target_label |
|
metadata |
|
metric |
|
name |
|
namespace |
The namespace/prefix portion of this entity's identifier |
negated |
|
neo4j |
|
node_hierarchy |
|
object |
|
object_best_matches |
|
object_category |
The category of the object entity |
object_closure |
Field containing object id and the ids of all of it's ancestors |
object_closure_label |
Field containing object name and the names of all of it's ancestors |
object_id |
|
object_information_content |
The IC of the object |
object_label |
The name of the object entity |
object_namespace |
The namespace/prefix of the object entity |
object_source |
the source for the second entity |
object_taxon |
|
object_taxon_label |
|
object_termset |
|
offset |
offset into the total number of items |
onset_qualifier |
|
onset_qualifier_category |
The category of the onset_qualifier entity |
onset_qualifier_closure |
Field containing onset_qualifier id and the ids of all of it's ancestors |
onset_qualifier_closure_label |
Field containing onset_qualifier name and the names of all of it's ancestors |
onset_qualifier_label |
The name of the onset_qualifier entity |
onset_qualifier_namespace |
The namespace/prefix of the onset_qualifier entity |
original_object |
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original_subject |
|
overlap_coefficient |
|
pathway |
|
phenodigm_score |
the geometric mean of the jaccard similarity and the information content |
predicate |
|
predicate_id |
|
primary_knowledge_source |
|
provided_by |
|
provided_by_link |
A link to the docs for the knowledge source that provided the node/edge |
publications |
|
publications_links |
List of ExpandedCuries with id and url for publications |
qc_report |
|
qualifier |
|
qualifier_category |
The category of the frequency_qualifier entity |
qualifier_closure |
Field containing frequency_qualifier id and the ids of all of it's ancestors |
qualifier_closure_label |
Field containing frequency_qualifier name and the names of all of it's ancest... |
qualifier_label |
The name of the frequency_qualifier entity |
qualifier_namespace |
The namespace/prefix of the frequency_qualifier entity |
qualifiers |
|
qualifiers_category |
The category of the frequency_qualifier entity |
qualifiers_closure |
Field containing frequency_qualifier id and the ids of all of it's ancestors |
qualifiers_closure_label |
Field containing frequency_qualifier name and the names of all of it's ancest... |
qualifiers_label |
The name of the frequency_qualifier entity |
qualifiers_namespace |
The namespace/prefix of the frequency_qualifier entity |
score |
|
sex_qualifier |
|
sex_qualifier_category |
The category of the sex_qualifier entity |
sex_qualifier_closure |
Field containing sex_qualifier id and the ids of all of it's ancestors |
sex_qualifier_closure_label |
Field containing sex_qualifier name and the names of all of it's ancestors |
sex_qualifier_label |
The name of the sex_qualifier entity |
sex_qualifier_namespace |
The namespace/prefix of the sex_qualifier entity |
similarity |
|
solr |
|
sqlite |
|
stage_qualifier |
|
stage_qualifier_category |
The category of the stage_qualifier entity |
stage_qualifier_closure |
Field containing stage_qualifier id and the ids of all of it's ancestors |
stage_qualifier_closure_label |
Field containing stage_qualifier name and the names of all of it's ancestors |
stage_qualifier_label |
The name of the stage_qualifier entity |
stage_qualifier_namespace |
The namespace/prefix of the stage_qualifier entity |
start |
start position of the annotation |
sub_classes |
|
subject |
|
subject_best_matches |
|
subject_category |
The category of the subject entity |
subject_closure |
Field containing subject id and the ids of all of it's ancestors |
subject_closure_label |
Field containing subject name and the names of all of it's ancestors |
subject_id |
|
subject_information_content |
The IC of the subject |
subject_label |
The name of the subject entity |
subject_namespace |
The namespace/prefix of the subject entity |
subject_source |
the source for the first entity |
subject_taxon |
|
subject_taxon_label |
|
subject_termset |
|
subsumed_by_score |
|
subsumes_score |
|
super_classes |
|
symbol |
|
symmetric |
Whether the association type is symmetric, i |
synonym |
|
text |
text without tokens |
tokens |
A collection of entities or concepts |
total |
total number of items matching a query |
union_count |
|
uri |
The URI of the entity |
url |
|
version |
|
xref |
|