| agent_type |
Describes the high-level category of agent who originally generated a statem... |
| aggregator_knowledge_source |
|
| ancestor_id |
the most recent common ancestor of the two compared entities |
| ancestor_information_content |
The IC of the object |
| ancestor_label |
the name or label of the ancestor concept |
| ancestor_source |
|
| associated_categories |
|
| association_counts |
|
| average_score |
|
| best_score |
|
| bin_id |
The identifier for the histopheno bin a phenotype belongs to |
| bins |
List of histopheno bins for grouping phenotypes |
| broad_synonym |
A broader synonym for the entity |
| cases |
List of case entities in the matrix |
| category |
|
| causal_gene |
A list of genes that are known to be causally associated with a disease |
| causes_disease |
A list of diseases that are known to be causally associated with a gene |
| cells |
Map of case-phenotype cell data keyed by case_id:phenotype_id |
| clique_associations |
All associations within this clique: vertical (subclass_of from children to r... |
| clique_entities |
Species-specific child terms (HP, MP, ZP, etc |
| columns |
List of column entities |
| context_category |
The biolink category of the context entity |
| context_id |
The identifier of the context entity (e |
| context_name |
The name of the context entity |
| cosine_similarity |
the dot product of two node embeddings divided by the product of their length... |
| count |
count of documents |
| count_direct |
Count of direct associations (no closure/descendants) |
| count_with_orthologs |
Count including associations from orthologous genes |
| counterpart_category |
The category of the counterpart entity in a given association, eg |
| cross_species_term_clique |
|
| deprecated |
A boolean flag indicating that an entity is no longer considered current or v... |
| description |
|
| dice_similarity |
|
| direction |
The directionality of the association relative to a given entity for an assoc... |
| disease_context_qualifier |
A context qualifier representing a disease or condition in which a relationsh... |
| disease_context_qualifier_category |
The category of the disease_context_qualifier entity |
| disease_context_qualifier_closure |
Field containing disease_context_qualifier id and the ids of all of it's ance... |
| disease_context_qualifier_closure_label |
Field containing disease_context_qualifier name and the names of all of it's ... |
| disease_context_qualifier_label |
The name of the disease_context_qualifier entity |
| disease_context_qualifier_namespace |
The namespace/prefix of the disease_context_qualifier entity |
| disease_id |
The identifier for a disease entity |
| disease_name |
The name of a disease entity |
| end |
end position of the annotation |
| evidence_count |
count of supporting documents, evidence codes, and sources supplying evidence |
| exact_synonym |
An exact synonym for the entity |
| external_links |
ExpandedCurie with id and url for xrefs |
| facet_fields |
Collection of facet field responses with the field values and counts |
| facet_queries |
Collection of facet query responses with the query string values and counts |
| facet_values |
Collection of FacetValue label/value instances belonging to a FacetField |
| FDA_adverse_event_level |
The level of FDA adverse event reporting for a drug-condition association |
| frequency_qualifier |
|
| frequency_qualifier_category |
The category of the frequency_qualifier entity |
| frequency_qualifier_label |
The name of the frequency_qualifier entity |
| frequency_qualifier_namespace |
The namespace/prefix of the frequency_qualifier entity |
| full_id |
The full identifier for an entity |
| full_name |
The long form name of an entity |
| graph_stats |
|
| grouping_key |
A concatenation of fields used to group associations with the same essential/... |
| has_biological_sex |
The biological sex of an individual entity |
| has_count |
count of out of has_total representing a frequency |
| has_descendant |
A list of entity identifiers that are known to be descendants of this entity |
| has_descendant_count |
A count of the number of entities that are known to be descendants of this en... |
| has_descendant_label |
A list of entity labels that are known to be descendants of this entity |
| has_evidence |
|
| has_evidence_links |
List of ExpandedCuries with id and url for evidence |
| has_percentage |
percentage, which may be calculated from has_count and has_total, as 100 * qu... |
| has_phenotype |
A list of phenotype identifiers that are known to be associated with this ent... |
| has_phenotype_closure |
A list of phenotype identifiers that are known to be associated with this ent... |
| has_phenotype_closure_label |
A list of phenotype labels that are known to be associated with this entity e... |
| has_phenotype_count |
A count of the number of phenotypes that are known to be associated with this... |
| has_phenotype_label |
A list of phenotype labels that are known to be associated with this entity |
| has_quotient |
quotient, which should be 1/100 of has_percentage |
| has_total |
total, devided by has_count, representing a frequency |
| highlighting |
Optional highlighting information for search results |
| id |
|
| in_taxon |
The biolink taxon that the entity is in the closure of |
| in_taxon_label |
The label of the biolink taxon that the entity is in the closure of |
| information_content |
The IC is the negative log of the probability of the concept |
| inheritance |
|
| intersection_count |
|
| iri |
|
| is_direct |
Whether the case is directly associated with the disease or via a descendant |
| items |
A collection of items, with the type to be overriden by slot_usage |
| jaccard_similarity |
The number of concepts in the intersection divided by the number in the union |
| kg |
|
| knowledge_level |
Describes the level of knowledge expressed in a statement, based on the reaso... |
| knowledge_source |
|
| label |
|
| limit |
number of items to return in a response |
| mapping_justification |
|
| mappings |
List of ExpandedCuries with id and url for mapped entities |
| match_source |
|
| match_source_label |
|
| match_subsumer |
|
| match_subsumer_label |
|
| match_target |
the entity matches |
| match_target_label |
|
| metadata |
|
| metric |
|
| name |
|
| namespace |
The namespace/prefix portion of this entity's identifier |
| narrow_synonym |
A narrower synonym for the entity |
| negated |
|
| neo4j |
|
| node_hierarchy |
|
| object |
|
| object_aspect_qualifier |
Composes with the core concept (+ qualifier) to describe new concepts of a mo... |
| object_best_matches |
|
| object_category |
The category of the object entity |
| object_closure |
Field containing object id and the ids of all of it's ancestors |
| object_closure_label |
Field containing object name and the names of all of it's ancestors |
| object_id |
|
| object_information_content |
The IC of the object |
| object_label |
The name of the object entity |
| object_namespace |
The namespace/prefix of the object entity |
| object_source |
the source for the second entity |
| object_specialization_qualifier |
A qualifier that composes with a core subject/object concept to define a more... |
| object_specialization_qualifier_category |
The category of the object_specialization_qualifier |
| object_specialization_qualifier_closure |
A closure of the object_specialization_qualifier, including the object_specia... |
| object_specialization_qualifier_closure_label |
A closure of the object_specialization_qualifier, including the object_specia... |
| object_specialization_qualifier_label |
A label for the object_specialization_qualifier |
| object_specialization_qualifier_namespace |
The namespace/prefix of the object_specialization_qualifier |
| object_taxon |
|
| object_taxon_label |
|
| object_termset |
|
| offset |
offset into the total number of items |
| onset_qualifier |
|
| onset_qualifier_category |
The category of the onset_qualifier entity |
| onset_qualifier_label |
The name of the onset_qualifier entity |
| onset_qualifier_namespace |
The namespace/prefix of the onset_qualifier entity |
| original_object |
|
| original_predicate |
used to hold the original relation/predicate that an external knowledge sourc... |
| original_subject |
|
| overlap_coefficient |
|
| pathway |
|
| phenodigm_score |
the geometric mean of the jaccard similarity and the information content |
| phenotype_count |
Number of phenotypes in a bin |
| phenotype_ids |
List of phenotype identifiers belonging to a bin |
| phenotypes |
List of phenotype entities in the matrix |
| predicate |
|
| predicate_id |
|
| present |
Whether the phenotype is present for a case |
| primary_knowledge_source |
|
| provided_by |
|
| provided_by_link |
A link to the docs for the knowledge source that provided the node/edge |
| publications |
|
| publications_links |
List of ExpandedCuries with id and url for publications |
| qc_report |
|
| qualifier |
|
| qualifier_category |
The category of the frequency_qualifier entity |
| qualifier_label |
The name of the frequency_qualifier entity |
| qualifier_namespace |
The namespace/prefix of the frequency_qualifier entity |
| qualifiers |
|
| qualifiers_category |
The category of the frequency_qualifier entity |
| qualifiers_closure |
Field containing frequency_qualifier id and the ids of all of it's ancestors |
| qualifiers_closure_label |
Field containing frequency_qualifier name and the names of all of it's ancest... |
| qualifiers_label |
The name of the frequency_qualifier entity |
| qualifiers_namespace |
The namespace/prefix of the frequency_qualifier entity |
| related_synonym |
A related synonym for the entity |
| root_term |
The species-independent grouping term (UPHENO/UBERON) that serves as the cros... |
| rows |
List of row entities |
| score |
|
| sex_qualifier |
|
| sex_qualifier_category |
The category of the sex_qualifier entity |
| sex_qualifier_label |
The name of the sex_qualifier entity |
| sex_qualifier_namespace |
The namespace/prefix of the sex_qualifier entity |
| similarity |
|
| solr |
|
| source_association_category |
The biolink category of the source association |
| source_association_evidence_count |
Number of evidence items supporting the source association |
| source_association_predicate |
The predicate of the source association |
| source_association_primary_knowledge_source |
Primary knowledge source for the source association |
| source_association_publications |
Publication CURIEs supporting the source association |
| source_disease_id |
The disease ID that a case is indirectly associated with (for descendant dise... |
| source_disease_label |
The label of the source disease for indirect case associations |
| source_id |
For indirect associations, the ID of the direct entity |
| source_label |
For indirect associations, the label of the direct entity |
| species_context_qualifier |
A context qualifier representing a species in which a relationship expressed ... |
| species_context_qualifier_category |
The category of the species_context_qualifier entity |
| species_context_qualifier_label |
The name of the species_context_qualifier entity |
| species_context_qualifier_namespace |
The namespace/prefix of the species_context_qualifier entity |
| sqlite |
|
| stage_qualifier |
|
| stage_qualifier_category |
The category of the stage_qualifier entity |
| stage_qualifier_label |
The name of the stage_qualifier entity |
| stage_qualifier_namespace |
The namespace/prefix of the stage_qualifier entity |
| start |
start position of the annotation |
| sub_classes |
|
| subject |
|
| subject_best_matches |
|
| subject_category |
The category of the subject entity |
| subject_closure |
Field containing subject id and the ids of all of it's ancestors |
| subject_closure_label |
Field containing subject name and the names of all of it's ancestors |
| subject_id |
|
| subject_information_content |
The IC of the subject |
| subject_label |
The name of the subject entity |
| subject_namespace |
The namespace/prefix of the subject entity |
| subject_source |
the source for the first entity |
| subject_specialization_qualifier |
A qualifier that composes with a core subject/object concept to define a more... |
| subject_specialization_qualifier_category |
The category of the subject_specialization_qualifier |
| subject_specialization_qualifier_closure |
A closure of the subject_specialization_qualifier, including the subject_spec... |
| subject_specialization_qualifier_closure_label |
A closure of the subject_specialization_qualifier, including the subject_spec... |
| subject_specialization_qualifier_label |
A label for the subject_specialization_qualifier |
| subject_specialization_qualifier_namespace |
The namespace/prefix of the subject_specialization_qualifier |
| subject_taxon |
|
| subject_taxon_label |
|
| subject_termset |
|
| subsets |
A list of subsets that the entity belongs to |
| subsumed_by_score |
|
| subsumes_score |
|
| super_classes |
|
| supporting_text |
The text in a publication that supports the assertion in the association |
| symbol |
|
| symmetric |
Whether the association type is symmetric, i |
| synonym |
|
| taxon |
The taxon ID of the entity |
| taxon_label |
The taxon label of the entity |
| text |
text without tokens |
| tokens |
A collection of entities or concepts |
| total |
total number of items matching a query |
| total_cases |
Total number of cases in the matrix |
| total_columns |
Total number of column entities in the grid |
| total_phenotypes |
Total number of phenotypes in the matrix |
| total_rows |
Total number of row entities in the grid |
| type |
The type of the entity (e |
| union_count |
|
| uri |
The URI of the entity |
| url |
|
| value |
The value of a qualifier |
| version |
|
| xref |
|