Class: CasePhenotypeCellData

Data for a single case-phenotype cell in the matrix

URI: https://w3id.org/monarch/monarch-py/CasePhenotypeCellData

 classDiagram
    class CasePhenotypeCellData
    click CasePhenotypeCellData href "../CasePhenotypeCellData/"
      CasePhenotypeCellData : id

      CasePhenotypeCellData : negated

      CasePhenotypeCellData : onset_qualifier

      CasePhenotypeCellData : onset_qualifier_label

      CasePhenotypeCellData : present

      CasePhenotypeCellData : publications

Slots

Name	Cardinality and Range	Description	Inheritance
id	1 String		direct
present	1 Boolean	Whether the phenotype is present for a case	direct
negated	0..1 Boolean		direct
onset_qualifier	0..1 String		direct
onset_qualifier_label	0..1 String	The name of the onset_qualifier entity	direct
publications	* String		direct

Usages

used by	used in	type	used
CasePhenotypeMatrixResponse	cells	range	CasePhenotypeCellData

Identifier and Mapping Information

Schema Source

• from schema: https://w3id.org/monarch/monarch-py

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/monarch/monarch-py/CasePhenotypeCellData
native	https://w3id.org/monarch/monarch-py/CasePhenotypeCellData

LinkML Source

Direct

name: CasePhenotypeCellData
description: Data for a single case-phenotype cell in the matrix
from_schema: https://w3id.org/monarch/monarch-py
slots:
- id
- present
- negated
- onset_qualifier
- onset_qualifier_label
- publications
slot_usage:
  id:
    name: id
    identifier: true
    required: true
  present:
    name: present
    required: true
  publications:
    name: publications
    multivalued: true

Induced

name: CasePhenotypeCellData
description: Data for a single case-phenotype cell in the matrix
from_schema: https://w3id.org/monarch/monarch-py
slot_usage:
  id:
    name: id
    identifier: true
    required: true
  present:
    name: present
    required: true
  publications:
    name: publications
    multivalued: true
attributes:
  id:
    name: id
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    identifier: true
    alias: id
    owner: CasePhenotypeCellData
    domain_of:
    - Association
    - ExpandedCurie
    - Entity
    - HistoPheno
    - HistoBin
    - Mapping
    - MultiEntityAssociationResults
    - CaseEntity
    - CasePhenotype
    - HistoPhenoBin
    - CasePhenotypeCellData
    - GridColumnEntity
    - GridRowEntity
    - GridBin
    - Qualifier
    - GridCellData
    - TermInfo
    range: string
    required: true
  present:
    name: present
    description: Whether the phenotype is present for a case
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: present
    owner: CasePhenotypeCellData
    domain_of:
    - CasePhenotypeCellData
    - GridCellData
    range: boolean
    required: true
  negated:
    name: negated
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: negated
    owner: CasePhenotypeCellData
    domain_of:
    - Association
    - CompactAssociation
    - CasePhenotypeCellData
    - GridCellData
    range: boolean
  onset_qualifier:
    name: onset_qualifier
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: onset_qualifier
    owner: CasePhenotypeCellData
    domain_of:
    - Association
    - CasePhenotypeCellData
    range: string
  onset_qualifier_label:
    name: onset_qualifier_label
    description: The name of the onset_qualifier entity
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    is_a: name
    alias: onset_qualifier_label
    owner: CasePhenotypeCellData
    domain_of:
    - Association
    - CasePhenotypeCellData
    range: string
  publications:
    name: publications
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: publications
    owner: CasePhenotypeCellData
    domain_of:
    - Association
    - CasePhenotypeCellData
    - GridCellData
    range: string
    multivalued: true