Class: Entity
Represents an Entity in the Monarch KG data model
URI: https://w3id.org/monarch/monarch-py/:Entity
classDiagram
class Entity
click Entity href "../Entity"
Entity <|-- Node
click Node href "../Node"
Entity <|-- SearchResult
click SearchResult href "../SearchResult"
Entity : category
Entity : deprecated
Entity : description
Entity : full_name
Entity : has_phenotype
Entity : has_phenotype_closure
Entity : has_phenotype_closure_label
Entity : has_phenotype_count
Entity : has_phenotype_label
Entity : id
Entity : in_taxon
Entity : in_taxon_label
Entity : iri
Entity : name
Entity : namespace
Entity : provided_by
Entity : symbol
Entity : synonym
Entity : uri
Entity : xref
Inheritance
- Entity
Slots
Name | Cardinality and Range | Description | Inheritance |
---|---|---|---|
id | 1 String |
direct | |
category | 0..1 String |
direct | |
name | 0..1 String |
direct | |
full_name | 0..1 String |
The long form name of an entity | direct |
deprecated | 0..1 Boolean |
A boolean flag indicating that an entity is no longer considered current or v... | direct |
description | 0..1 String |
direct | |
xref | * String |
direct | |
provided_by | 0..1 String |
direct | |
in_taxon | 0..1 String |
The biolink taxon that the entity is in the closure of | direct |
in_taxon_label | 0..1 String |
The label of the biolink taxon that the entity is in the closure of | direct |
symbol | 0..1 String |
direct | |
synonym | * String |
direct | |
uri | 0..1 String |
The URI of the entity | direct |
iri | 0..1 String |
direct | |
namespace | 0..1 String |
The namespace/prefix portion of this entity's identifier | direct |
has_phenotype | * String |
A list of phenotype identifiers that are known to be associated with this ent... | direct |
has_phenotype_label | * String |
A list of phenotype labels that are known to be associated with this entity | direct |
has_phenotype_closure | * String |
A list of phenotype identifiers that are known to be associated with this ent... | direct |
has_phenotype_closure_label | * String |
A list of phenotype labels that are known to be associated with this entity e... | direct |
has_phenotype_count | 0..1 Integer |
A count of the number of phenotypes that are known to be associated with this... | direct |
Usages
used by | used in | type | used |
---|---|---|---|
EntityResults | items | range | Entity |
Node | inheritance | range | Entity |
Node | causal_gene | range | Entity |
Node | causes_disease | range | Entity |
NodeHierarchy | super_classes | range | Entity |
NodeHierarchy | sub_classes | range | Entity |
TextAnnotationResult | tokens | range | Entity |
SemsimSearchResult | subject | range | Entity |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/monarch/monarch-py
Mappings
Mapping Type | Mapped Value |
---|---|
self | https://w3id.org/monarch/monarch-py/:Entity |
native | https://w3id.org/monarch/monarch-py/:Entity |
LinkML Source
Direct
name: Entity
description: Represents an Entity in the Monarch KG data model
from_schema: https://w3id.org/monarch/monarch-py
slots:
- id
- category
- name
- full_name
- deprecated
- description
- xref
- provided_by
- in_taxon
- in_taxon_label
- symbol
- synonym
- uri
- iri
- namespace
- has_phenotype
- has_phenotype_label
- has_phenotype_closure
- has_phenotype_closure_label
- has_phenotype_count
Induced
name: Entity
description: Represents an Entity in the Monarch KG data model
from_schema: https://w3id.org/monarch/monarch-py
attributes:
id:
name: id
from_schema: https://w3id.org/monarch/monarch-py
rank: 1000
identifier: true
alias: id
owner: Entity
domain_of:
- Association
- ExpandedCurie
- Entity
- HistoPheno
- HistoBin
- Mapping
- MultiEntityAssociationResults
- TermInfo
range: string
required: true
category:
name: category
from_schema: https://w3id.org/monarch/monarch-py
rank: 1000
multivalued: false
alias: category
owner: Entity
domain_of:
- Association
- AssociationCount
- CompactAssociation
- AssociationTypeMapping
- Entity
range: string
name:
name: name
from_schema: https://w3id.org/monarch/monarch-py
rank: 1000
alias: name
owner: Entity
domain_of:
- Entity
- MultiEntityAssociationResults
range: string
full_name:
name: full_name
description: The long form name of an entity
from_schema: https://w3id.org/monarch/monarch-py
rank: 1000
alias: full_name
owner: Entity
domain_of:
- Entity
range: string
deprecated:
name: deprecated
description: A boolean flag indicating that an entity is no longer considered
current or valid.
from_schema: https://w3id.org/monarch/monarch-py
exact_mappings:
- oboInOwl:ObsoleteClass
rank: 1000
alias: deprecated
owner: Entity
domain_of:
- Entity
range: boolean
description:
name: description
from_schema: https://w3id.org/monarch/monarch-py
rank: 1000
alias: description
owner: Entity
domain_of:
- Entity
range: string
xref:
name: xref
from_schema: https://w3id.org/monarch/monarch-py
rank: 1000
multivalued: true
alias: xref
owner: Entity
domain_of:
- Entity
range: string
provided_by:
name: provided_by
from_schema: https://w3id.org/monarch/monarch-py
rank: 1000
alias: provided_by
owner: Entity
domain_of:
- Association
- Entity
range: string
in_taxon:
name: in_taxon
description: The biolink taxon that the entity is in the closure of.
from_schema: https://w3id.org/monarch/monarch-py
rank: 1000
alias: in_taxon
owner: Entity
domain_of:
- Entity
- Node
range: string
in_taxon_label:
name: in_taxon_label
description: The label of the biolink taxon that the entity is in the closure
of.
from_schema: https://w3id.org/monarch/monarch-py
rank: 1000
alias: in_taxon_label
owner: Entity
domain_of:
- Entity
- Node
range: string
symbol:
name: symbol
from_schema: https://w3id.org/monarch/monarch-py
rank: 1000
alias: symbol
owner: Entity
domain_of:
- Entity
range: string
synonym:
name: synonym
from_schema: https://w3id.org/monarch/monarch-py
rank: 1000
multivalued: true
alias: synonym
owner: Entity
domain_of:
- Entity
range: string
uri:
name: uri
description: The URI of the entity
from_schema: https://w3id.org/monarch/monarch-py
rank: 1000
alias: uri
owner: Entity
domain_of:
- Entity
range: string
iri:
name: iri
from_schema: https://w3id.org/monarch/monarch-py
rank: 1000
alias: iri
owner: Entity
domain_of:
- Entity
range: string
namespace:
name: namespace
description: The namespace/prefix portion of this entity's identifier
from_schema: https://w3id.org/monarch/monarch-py
rank: 1000
alias: namespace
owner: Entity
domain_of:
- Entity
range: string
has_phenotype:
name: has_phenotype
description: A list of phenotype identifiers that are known to be associated with
this entity
from_schema: https://w3id.org/monarch/monarch-py
rank: 1000
multivalued: true
alias: has_phenotype
owner: Entity
domain_of:
- Entity
range: string
inlined: true
inlined_as_list: true
has_phenotype_label:
name: has_phenotype_label
description: A list of phenotype labels that are known to be associated with this
entity
from_schema: https://w3id.org/monarch/monarch-py
rank: 1000
multivalued: true
alias: has_phenotype_label
owner: Entity
domain_of:
- Entity
range: string
inlined: true
inlined_as_list: true
has_phenotype_closure:
name: has_phenotype_closure
description: A list of phenotype identifiers that are known to be associated with
this entity expanded to include all ancestors
from_schema: https://w3id.org/monarch/monarch-py
rank: 1000
multivalued: true
alias: has_phenotype_closure
owner: Entity
domain_of:
- Entity
range: string
inlined: true
inlined_as_list: true
has_phenotype_closure_label:
name: has_phenotype_closure_label
description: A list of phenotype labels that are known to be associated with this
entity expanded to include all ancestors
from_schema: https://w3id.org/monarch/monarch-py
rank: 1000
multivalued: true
alias: has_phenotype_closure_label
owner: Entity
domain_of:
- Entity
range: string
inlined: true
inlined_as_list: true
has_phenotype_count:
name: has_phenotype_count
description: A count of the number of phenotypes that are known to be associated
with this entity
from_schema: https://w3id.org/monarch/monarch-py
rank: 1000
alias: has_phenotype_count
owner: Entity
domain_of:
- Entity
range: integer