Class: GridColumnEntity

A column entity in the grid (case, disease, ortholog, etc.)

URI: https://w3id.org/monarch/monarch-py/GridColumnEntity

 classDiagram
    class GridColumnEntity
    click GridColumnEntity href "../GridColumnEntity/"
      GridColumnEntity : category

      GridColumnEntity : id

      GridColumnEntity : is_direct

      GridColumnEntity : label

      GridColumnEntity : source_association_category

      GridColumnEntity : source_association_evidence_count

      GridColumnEntity : source_association_predicate

      GridColumnEntity : source_association_primary_knowledge_source

      GridColumnEntity : source_association_publications

      GridColumnEntity : source_id

      GridColumnEntity : source_label

      GridColumnEntity : taxon

      GridColumnEntity : taxon_label

Slots

Name	Cardinality and Range	Description	Inheritance
id	1 String		direct
label	0..1 String		direct
category	1 String		direct
is_direct	0..1 Boolean	Whether the case is directly associated with the disease or via a descendant	direct
source_id	0..1 String	For indirect associations, the ID of the direct entity	direct
source_label	0..1 String	For indirect associations, the label of the direct entity	direct
taxon	0..1 String	The taxon ID of the entity	direct
taxon_label	0..1 String	The taxon label of the entity	direct
source_association_category	0..1 String	The biolink category of the source association	direct
source_association_predicate	0..1 String	The predicate of the source association	direct
source_association_publications	* String	Publication CURIEs supporting the source association	direct
source_association_evidence_count	0..1 Integer	Number of evidence items supporting the source association	direct
source_association_primary_knowledge_source	0..1 String	Primary knowledge source for the source association	direct

Usages

used by	used in	type	used
EntityGridResponse	columns	range	GridColumnEntity

Identifier and Mapping Information

Schema Source

• from schema: https://w3id.org/monarch/monarch-py

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/monarch/monarch-py/GridColumnEntity
native	https://w3id.org/monarch/monarch-py/GridColumnEntity

LinkML Source

Direct

name: GridColumnEntity
description: A column entity in the grid (case, disease, ortholog, etc.)
from_schema: https://w3id.org/monarch/monarch-py
slots:
- id
- label
- category
- is_direct
- source_id
- source_label
- taxon
- taxon_label
- source_association_category
- source_association_predicate
- source_association_publications
- source_association_evidence_count
- source_association_primary_knowledge_source
slot_usage:
  id:
    name: id
    identifier: true
    required: true
  category:
    name: category
    required: true
  label:
    name: label
    required: false
  is_direct:
    name: is_direct
    required: false

Induced

name: GridColumnEntity
description: A column entity in the grid (case, disease, ortholog, etc.)
from_schema: https://w3id.org/monarch/monarch-py
slot_usage:
  id:
    name: id
    identifier: true
    required: true
  category:
    name: category
    required: true
  label:
    name: label
    required: false
  is_direct:
    name: is_direct
    required: false
attributes:
  id:
    name: id
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    identifier: true
    alias: id
    owner: GridColumnEntity
    domain_of:
    - Association
    - ExpandedCurie
    - Entity
    - HistoPheno
    - HistoBin
    - Mapping
    - MultiEntityAssociationResults
    - CaseEntity
    - CasePhenotype
    - HistoPhenoBin
    - CasePhenotypeCellData
    - GridColumnEntity
    - GridRowEntity
    - GridBin
    - Qualifier
    - GridCellData
    - TermInfo
    range: string
    required: true
  label:
    name: label
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: label
    owner: GridColumnEntity
    domain_of:
    - FacetValue
    - FacetField
    - CaseEntity
    - CasePhenotype
    - HistoPhenoBin
    - GridColumnEntity
    - GridRowEntity
    - GridBin
    - Qualifier
    - TermInfo
    range: string
    required: false
  category:
    name: category
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: category
    owner: GridColumnEntity
    domain_of:
    - Association
    - AssociationCount
    - CompactAssociation
    - AssociationTypeMapping
    - Entity
    - GridColumnEntity
    - GridRowEntity
    range: string
    required: true
    multivalued: false
  is_direct:
    name: is_direct
    description: Whether the case is directly associated with the disease or via a
      descendant
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: is_direct
    owner: GridColumnEntity
    domain_of:
    - CaseEntity
    - GridColumnEntity
    range: boolean
    required: false
  source_id:
    name: source_id
    description: For indirect associations, the ID of the direct entity
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: source_id
    owner: GridColumnEntity
    domain_of:
    - GridColumnEntity
    range: string
  source_label:
    name: source_label
    description: For indirect associations, the label of the direct entity
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: source_label
    owner: GridColumnEntity
    domain_of:
    - GridColumnEntity
    range: string
  taxon:
    name: taxon
    description: The taxon ID of the entity
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: taxon
    owner: GridColumnEntity
    domain_of:
    - GridColumnEntity
    range: string
  taxon_label:
    name: taxon_label
    description: The taxon label of the entity
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: taxon_label
    owner: GridColumnEntity
    domain_of:
    - GridColumnEntity
    range: string
  source_association_category:
    name: source_association_category
    description: The biolink category of the source association
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: source_association_category
    owner: GridColumnEntity
    domain_of:
    - GridColumnEntity
    range: string
  source_association_predicate:
    name: source_association_predicate
    description: The predicate of the source association
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: source_association_predicate
    owner: GridColumnEntity
    domain_of:
    - GridColumnEntity
    range: string
  source_association_publications:
    name: source_association_publications
    description: Publication CURIEs supporting the source association
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: source_association_publications
    owner: GridColumnEntity
    domain_of:
    - GridColumnEntity
    range: string
    multivalued: true
  source_association_evidence_count:
    name: source_association_evidence_count
    description: Number of evidence items supporting the source association
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: source_association_evidence_count
    owner: GridColumnEntity
    domain_of:
    - GridColumnEntity
    range: integer
  source_association_primary_knowledge_source:
    name: source_association_primary_knowledge_source
    description: Primary knowledge source for the source association
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: source_association_primary_knowledge_source
    owner: GridColumnEntity
    domain_of:
    - GridColumnEntity
    range: string